Genetic diversity analysis of the ORF5 gene in porcine reproductive and respiratory syndrome virus samples from South China

Zong-Xi Cao; Pei-Rong Jiao; Yu-Mao Huang; Hong-Yang Qin; Liu-Wu Kong; Quan-Hui Pan; Yi-Min He; Gui-Hong Zhang

doi:10.1556/avet.2012.013

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Acta Veterinaria Hungarica

Volume/Issue:: Volume 60: Issue 1

Genetic diversity analysis of the ORF5 gene in porcine reproductive and respiratory syndrome virus samples from South China

Authors:

Zong-Xi Cao,

Zong-Xi Cao

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Pei-Rong Jiao,

Pei-Rong Jiao South China Agricultural University College of Veterinary Medicine Guangzhou 510642 China

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Yu-Mao Huang,

Yu-Mao Huang South China Agricultural University College of Veterinary Medicine Guangzhou 510642 China

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Hong-Yang Qin,

Hong-Yang Qin South China Agricultural University College of Veterinary Medicine Guangzhou 510642 China

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Liu-Wu Kong,

Liu-Wu Kong South China Agricultural University College of Veterinary Medicine Guangzhou 510642 China

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Quan-Hui Pan,

Quan-Hui Pan South China Agricultural University College of Veterinary Medicine Guangzhou 510642 China

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Yi-Min He, and

Yi-Min He South China Agricultural University College of Veterinary Medicine Guangzhou 510642 China

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Gui-Hong Zhang

Gui-Hong Zhang South China Agricultural University College of Veterinary Medicine Guangzhou 510642 China

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Pages:: 157–164

Online Publication Date:: 25 Feb 2012

Publication Date:: 01 Mar 2012

Article Category:: Journal Article

DOI:: https://doi.org/10.1556/avet.2012.013

Keywords (English):: PRRSV; ORF5; genetic diversity analysis; South China; subgenotype

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To understand the genetic diversity of porcine reproductive and respiratory syndrome virus (PRRSV) in South China, we collected 231 clinical samples from pigs with suspected PRRSV infection in Guangdong between 2007 and 2009. We found that 74 of 231 samples were positive by RT-PCR. The PCR products of the ORF5 gene of 35 isolates from different farms were sequenced and their DNA sequences were compared to 23 other PRRSV isolates in the GenBank. We found that the nucleotide similarity among all South China isolates ranged from 87.6% to 100%, and all belonged to the North American genotype. Most of them were classified into subgenotype I, but the rest mapped to subgenotypes III, V or VI. Those in subgenotypes I and III were found to be highly variable in the primary neutralising epitope (PNE) with a specific amino acid mutation (F39/L39→I39), and a few isolates in subgenotypes I and III isolates also had a mutation at L41 (L41→S41). PRRSV isolates in subgenotypes III, V and VI had less potential glycosylation sites than those in subgenotype I. Our data contribute to the understanding of molecular variation of PRRSV in South China.

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Acta Veterinaria Hungarica

Print ISSN:: 0236-6290

Online ISSN:: 1588-2705

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Editorial Board

Béla DÉNES (National Food Chain Safety Office, Budapest Hungary)
Edit ESZTERBAUER (Veterinary Medical Research Institute, Budapest, Hungary)
Hedvig FÉBEL (National Agricultural Innovation Centre, Herceghalom, Hungary)
László FODOR (University of Veterinary Medicine, Budapest, Hungary)
Balázs HARRACH (Veterinary Medical Research Institute, Budapest, Hungary)
Peter MASSÁNYI (Slovak University of Agriculture in Nitra, Nitra, Slovak Republic)
Béla NAGY (Veterinary Medical Research Institute, Budapest, Hungary)
Tibor NÉMETH (University of Veterinary Medicine, Budapest, Hungary)
Zsuzsanna NEOGRÁDY (University of Veterinary Medicine, Budapest, Hungary)
Alessandra PELAGALLI (University of Naples Federico II, Naples, Italy)
Kurt PFISTER (Ludwig-Maximilians-University of Munich, Munich, Germany)
László SOLTI (University of Veterinary Medicine, Budapest, Hungary)
József SZABÓ (University of Veterinary Medicine, Budapest, Hungary)
Péter VAJDOVICH (University of Veterinary Medicine, Budapest, Hungary)
János VARGA (University of Veterinary Medicine, Budapest, Hungary)
Štefan VILČEK (University of Veterinary Medicine in Kosice, Kosice, Slovak Republic)
Károly VÖRÖS (University of Veterinary Medicine, Budapest, Hungary)
Herbert WEISSENBÖCK (University of Veterinary Medicine, Vienna, Austria)
Attila ZSARNOVSZKY (Szent István University, Gödöllő, Hungary)

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Web of Science
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Journal Impact Factor	0.900
Rank by Impact Factor	Veterinary Sciences 95/143
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2021
Web of Science
Total Cites WoS	1040
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2020
Total Cites	987
WoS	987
Journal Impact Factor	0,955
Rank by	Veterinary Sciences 101/146 (Q3)
Impact Factor
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Journal Self Cites
5 Year	1,164
Impact Factor	1,164
Journal	0,57
Citation Indicator
Rank by Journal	Veterinary Sciences 93/166 (Q3)
Citation Indicator
Citable	49
Items	49
Total	49
Articles	49
Total	0
Reviews	0
Scimago	33
H-index	33
Scimago	0,395
Journal Rank	0,395
Scimago	Veterinary (miscellaneous) Q2
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2019
Total Cites WoS	798
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Normalized Eigenfactor	0,09791
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Scopus Scite Score	335/213=1,6
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Acta Veterinaria Hungarica
Language	English
Size	A4
Year of Foundation	1951
Volumes per Year	1
Issues per Year	4
Founder	Magyar Tudományos Akadémia
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ISSN	0236-6290 (Print)
ISSN	1588-2705 (Online)

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