Altschul, S. F., Gish, W., Miller, W., Myers, E. W. and Lipman, D. J. (1990): Basic local alignment search tool.. J. Mol. Biol. 215, 403–410.

Altschul, S. F., Gish, W., Miller, W., Myers, E. W. and Lipman, D. J. (1990): Basic local alignment search tool.. J. Mol. Biol.215, 403–410.)| false
• Search Google Scholar
• Export Citation

Becher, P. and Tautz, N. (2011): RNA recombination in pestiviruses: Cellular RNA sequences in viral genomes highlight the role of host factors for viral persistence and lethal disease.. RNA Biol. 8, 216–224.

Becher, P. and Tautz, N. (2011): RNA recombination in pestiviruses: Cellular RNA sequences in viral genomes highlight the role of host factors for viral persistence and lethal disease.. RNA Biol.8, 216–224.)| false
• Search Google Scholar
• Export Citation

Becher, P., Orlich, M., Konig, M. and Thiel, H. J. (1999): Nonhomologous RNA recombination in bovine viral diarrhea virus: Molecular characterization of a variety of subgenomic RNAs isolated during an outbreak of fatal mucosal disease.. J. Virol. 73, 5646–5653.

Becher, P., Orlich, M., Konig, M. and Thiel, H. J. (1999): Nonhomologous RNA recombination in bovine viral diarrhea virus: Molecular characterization of a variety of subgenomic RNAs isolated during an outbreak of fatal mucosal disease.. J. Virol.73, 5646–5653.)| false
• Search Google Scholar
• Export Citation

Boni, M. F., Posada, D. and Feldman, M. W. (2007): An exact nonparametric method for inferring mosaic structure in sequence triplets.. Genetics 176, 1035–1047.

Boni, M. F., Posada, D. and Feldman, M. W. (2007): An exact nonparametric method for inferring mosaic structure in sequence triplets.. Genetics176, 1035–1047.)| false
• Search Google Scholar
• Export Citation

Deng, Y., Shan, T. L., Tong, W., Zheng, X. C., Guo, Y. Y., Zheng, H., Cao, S. J., Wen, X. T. and Tong, G. Z. (2014): Genomic characterization of a bovine viral diarrhea virus 1 isolate from swine.. Arch. Virol. 159, 2513–2517.

Deng, Y., Shan, T. L., Tong, W., Zheng, X. C., Guo, Y. Y., Zheng, H., Cao, S. J., Wen, X. T. and Tong, G. Z. (2014): Genomic characterization of a bovine viral diarrhea virus 1 isolate from swine.. Arch. Virol.159, 2513–2517.)| false
• Search Google Scholar
• Export Citation

Frey, H. R., Flebbe, U. and Liess, B. (1996): Prevalence and clinical symptoms of persistent BVDvirus infection in cattle herds of Lower Saxony.. Prakt. Tierarzt 77, 49–52.

Frey, H. R., Flebbe, U. and Liess, B. (1996): Prevalence and clinical symptoms of persistent BVDvirus infection in cattle herds of Lower Saxony.. Prakt. Tierarzt77, 49–52.)| false
• Search Google Scholar
• Export Citation

Fulton, R. W., Step, D. L., Ridpath, J. F., Saliki, J. T., Confer, A. W., Johnson, B. J., Briggs, R. E., Hawley, R. V., Burge, L. J. and Payton, M. E. (2003): Response of calves persistently infected with noncytopathic bovine viral diarrhea virus (BVDV) subtype 1b after vaccination with heterologous BVDV strains in modified live virus vaccines and Mannheimia haemolytica bacterin-toxoid.. Vaccine 21, 2980–2985.

Fulton, R. W., Step, D. L., Ridpath, J. F., Saliki, J. T., Confer, A. W., Johnson, B. J., Briggs, R. E., Hawley, R. V., Burge, L. J. and Payton, M. E. (2003): Response of calves persistently infected with noncytopathic bovine viral diarrhea virus (BVDV) subtype 1b after vaccination with heterologous BVDV strains in modified live virus vaccines and Mannheimia haemolytica bacterin-toxoid.. Vaccine21, 2980–2985.)| false
• Search Google Scholar
• Export Citation

Gibbs, M. J., Armstrong, J. S. and Gibbs, A. J. (2000): Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences.. Bioinformatics 16, 573–582.

Gibbs, M. J., Armstrong, J. S. and Gibbs, A. J. (2000): Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences.. Bioinformatics16, 573–582.)| false
• Search Google Scholar
• Export Citation

Holmes, E. C., Worobey, M. and Rambaut, A. (1999): Phylogenetic evidence for recombination in dengue virus.. Mol. Biol. Evol. 16, 405–409.

Holmes, E. C., Worobey, M. and Rambaut, A. (1999): Phylogenetic evidence for recombination in dengue virus.. Mol. Biol. Evol.16, 405–409.)| false
• Search Google Scholar
• Export Citation

Jones, L. R. and Weber, E. L. (2004): Homologous recombination in bovine pestiviruses: Phylogenetic and statistic evidence.. Infect. Genet. Evol. 4, 335–343.

Jones, L. R. and Weber, E. L. (2004): Homologous recombination in bovine pestiviruses: Phylogenetic and statistic evidence.. Infect. Genet. Evol.4, 335–343.)| false
• Search Google Scholar
• Export Citation

Lai, V. C. H., Zhong, W. D., Skelton, A., Ingravallo, P., Vassilev, V., Donis, R. O., Hong, Z. and Lau, J. Y. N. (2000): Generation and characterization of a hepatitis C virus NS3 proteasedependent bovine viral diarrhea virus.. J. Virol. 74, 6339–6347.

Lai, V. C. H., Zhong, W. D., Skelton, A., Ingravallo, P., Vassilev, V., Donis, R. O., Hong, Z. and Lau, J. Y. N. (2000): Generation and characterization of a hepatitis C virus NS3 proteasedependent bovine viral diarrhea virus.. J. Virol.74, 6339–6347.)| false
• Search Google Scholar
• Export Citation

Leal, E., Villanova, F. E., Lin, W. C., Hu, F., Liu, Q. F., Liu, Y. B. and Cui, S. J. (2012): Interclade recombination in porcine parvovirus strains (Retracted article.. See vol. 94, pg. 464, 2013). J. Gen. Virol. 93, 2692–2704.

Leal, E., Villanova, F. E., Lin, W. C., Hu, F., Liu, Q. F., Liu, Y. B. and Cui, S. J. (2012): Interclade recombination in porcine parvovirus strains (Retracted article.. See vol. 94, pg.464, 2013). J. Gen. Virol. 93, 2692–2704.)| false
• Search Google Scholar
• Export Citation

Martin, D. and Rybicki, E. (2000): RDP: detection of recombination amongst aligned sequences.. Bioinformatics 16, 562–563.

Martin, D. and Rybicki, E. (2000): RDP: detection of recombination amongst aligned sequences.. Bioinformatics16, 562–563.)| false
• Search Google Scholar
• Export Citation

Martin, D. P., Murrell, B., Golden, M., Khoosal, A. and Muhire, B. (2015): RDP4: Detection and analysis of recombination patterns in virus genomes. Virus. Evol. 1 (1): vev003. DOI: http://dx.doi.org/10.1093/ve/vev003.

Martin, D. P., Posada, D., Crandall, K. A. and Williamson, C. (2005): A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints.. AIDS Res. Hum. Retrov. 21, 98–102.

Martin, D. P., Posada, D., Crandall, K. A. and Williamson, C. (2005): A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints.. AIDS Res. Hum. Retrov.21, 98–102.)| false
• Search Google Scholar
• Export Citation

Neill, J. D., Dubovi, E. J. and Ridpath, J. F. (2015): Identification of amino acid changes in the envelope glycoproteins of bovine viral diarrhea viruses isolated from alpaca that may be involved in host adaptation.. Vet. Microbiol. 179, 299–303.

Neill, J. D., Dubovi, E. J. and Ridpath, J. F. (2015): Identification of amino acid changes in the envelope glycoproteins of bovine viral diarrhea viruses isolated from alpaca that may be involved in host adaptation.. Vet. Microbiol.179, 299–303.)| false
• Search Google Scholar
• Export Citation

Padidam, M., Sawyer, S. and Fauquet, C. M. (1999): Possible emergence of new geminiviruses by frequent recombination.. Virology 265, 218–225.

Padidam, M., Sawyer, S. and Fauquet, C. M. (1999): Possible emergence of new geminiviruses by frequent recombination.. Virology265, 218–225.)| false
• Search Google Scholar
• Export Citation

Posada, D. (2002): Evaluation of methods for detecting recombination from DNA sequences: Empirical data.. Mol. Biol. Evol. 19, 708–717.

Posada, D. (2002): Evaluation of methods for detecting recombination from DNA sequences: Empirical data.. Mol. Biol. Evol.19, 708–717.)| false
• Search Google Scholar
• Export Citation

Ridpath, J. F. and Bolin, S. R. (1995): The genomic sequence of a virulent bovine viral diarrhea virus (BVDV) from the type-2 genotype –detection of a large genomic insertion in a noncytopathic BVDV.. Virology 212, 39–46.

Ridpath, J. F. and Bolin, S. R. (1995): The genomic sequence of a virulent bovine viral diarrhea virus (BVDV) from the type-2 genotype –detection of a large genomic insertion in a noncytopathic BVDV.. Virology212, 39–46.)| false
• Search Google Scholar
• Export Citation

Ridpath, J. F. and Neill, J. D. (2000): Detection and characterization of genetic recombination in cytopathic type 2 bovine viral diarrhea viruses.. J. Virol. 74, 8771–8774.

Ridpath, J. F. and Neill, J. D. (2000): Detection and characterization of genetic recombination in cytopathic type 2 bovine viral diarrhea viruses.. J. Virol.74, 8771–8774.)| false
• Search Google Scholar
• Export Citation

Ridpath, J. F., Neill, J. D., Vilcek, S., Dubovi, E. J. and Carman, S. (2006): Multiple outbreaks of severe acute BVDV in North America occurring between 1993 and 1995 linked to the same BVDV-2 strain.. Vet. Microbiol. 114, 196–204.

Ridpath, J. F., Neill, J. D., Vilcek, S., Dubovi, E. J. and Carman, S. (2006): Multiple outbreaks of severe acute BVDV in North America occurring between 1993 and 1995 linked to the same BVDV-2 strain.. Vet. Microbiol.114, 196–204.)| false
• Search Google Scholar
• Export Citation

Simon-Loriere, E. and Holmes, E. C. (2011): Why do RNA viruses recombine? Nat.. Rev. Microbiol. 9, 617–626.

Simon-Loriere, E. and Holmes, E. C. (2011): Why do RNA viruses recombine? Nat.. Rev. Microbiol.9, 617–626.)| false
• Search Google Scholar
• Export Citation

Smith, J. M. (1992): Analyzing the mosaic structure of genes.. J. Mol. Evol. 34, 126–129.

Smith, J. M. (1992): Analyzing the mosaic structure of genes.. J. Mol. Evol.34, 126–129.)| false
• Search Google Scholar
• Export Citation

Tamura, K., Stecher, G., Peterson, D., Filipski, A. and Kumar, S. (2013): MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0.. Mol. Biol. Evol. 30, 2725–2729.

Tamura, K., Stecher, G., Peterson, D., Filipski, A. and Kumar, S. (2013): MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0.. Mol. Biol. Evol.30, 2725–2729.)| false
• Search Google Scholar
• Export Citation

Toplak, I., Sandvik, T., Barlic-Maganja, D., Grom, J. and Paton, D. J. (2004): Genetic typing of bovine viral diarrhoea virus: most Slovenian isolates are of genotypes 1d and 1f.. Vet. Microbiol. 99, 175–185.

Toplak, I., Sandvik, T., Barlic-Maganja, D., Grom, J. and Paton, D. J. (2004): Genetic typing of bovine viral diarrhoea virus: most Slovenian isolates are of genotypes 1d and 1f.. Vet. Microbiol.99, 175–185.)| false
• Search Google Scholar
• Export Citation

Vilcek, S., Durkovic, B., Kolesarova, M., Greiser-Wilke, I. and Paton, D. (2004): Genetic diversity of international bovine viral diarrhoea virus (BVDV) isolates: identification of a new BVDV-1 genetic group.. Vet. Res. 35, 609–615.

Vilcek, S., Durkovic, B., Kolesarova, M., Greiser-Wilke, I. and Paton, D. (2004): Genetic diversity of international bovine viral diarrhoea virus (BVDV) isolates: identification of a new BVDV-1 genetic group.. Vet. Res.35, 609–615.)| false
• Search Google Scholar
• Export Citation

Weber, M. N., Streck, A. F., Silveira, S., Mosena, A. C. S., da Silva, M. S. and Canal, C. W. (2015): Homologous recombination in pestiviruses: Identification of three putative novel events between different subtypes/genogroups.. Infect. Genet. Evol. 30, 219–224.

Weber, M. N., Streck, A. F., Silveira, S., Mosena, A. C. S., da Silva, M. S. and Canal, C. W. (2015): Homologous recombination in pestiviruses: Identification of three putative novel events between different subtypes/genogroups.. Infect. Genet. Evol.30, 219–224.)| false
• Search Google Scholar
• Export Citation