Acta Microbiologica et Immunologica Hungarica
Volume/Issue:
Volume 68: Issue 1
Enteric pathogenic bacteria and resistance gene carriage in the homeless population in Marseille, France
Authors:
Tran Duc Anh Ly Aix Marseille University, IRD, AP-HM, SSA, VITROME, Marseille, France
IHU-Méditerranée Infection, Marseille, France

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Linda Hadjadj IHU-Méditerranée Infection, Marseille, France
Aix Marseille University, MEPHI, Marseille, France

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Van Thuan Hoang Aix Marseille University, IRD, AP-HM, SSA, VITROME, Marseille, France
IHU-Méditerranée Infection, Marseille, France
Pneumology Department, Thai Binh University of Medicine and Pharmacy, Thai Binh, Viet Nam

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Ndiaw Goumbala Aix Marseille University, IRD, AP-HM, SSA, VITROME, Marseille, France
IHU-Méditerranée Infection, Marseille, France
VITROME, Campus International IRD-UCAD de l'IRD, Dakar, Senegal

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Thi Loi Dao Aix Marseille University, IRD, AP-HM, SSA, VITROME, Marseille, France
IHU-Méditerranée Infection, Marseille, France
Family Medicine Department, Thai Binh University of Medicine and Pharmacy, Thai Binh, Viet Nam

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Sekene Badiaga IHU-Méditerranée Infection, Marseille, France
Aix Marseille University, Service des urgences CHU Hôpital Nord, Marseille, France

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Herve Tissot-Dupont IHU-Méditerranée Infection, Marseille, France
Aix Marseille University, MEPHI, Marseille, France

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Philippe Brouqui IHU-Méditerranée Infection, Marseille, France
Aix Marseille University, MEPHI, Marseille, France

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Didier Raoult Aix Marseille University, IRD, AP-HM, SSA, VITROME, Marseille, France
IHU-Méditerranée Infection, Marseille, France
Aix Marseille University, MEPHI, Marseille, France

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Jean-Marc Rolain IHU-Méditerranée Infection, Marseille, France
Aix Marseille University, MEPHI, Marseille, France

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Philippe Gautret Aix Marseille University, IRD, AP-HM, SSA, VITROME, Marseille, France
IHU-Méditerranée Infection, Marseille, France

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https://orcid.org/0000-0002-1664-958X
Pages:
7–13
Online Publication Date:
27 Jan 2021
Publication Date:
13 May 2021
Article Category:
Research Article
DOI:
https://doi.org/10.1556/030.2021.01346
Keywords (English):
antibiotic resistance gene; enteric bacteria; homeless; real-time polymerase chain reaction (qPCR); Escherichia coli pathotypes; Tropheryma whipplei
Restricted access

Abstract

We aimed to assess the prevalence of pathogenic bacteria and resistance genes in rectal samples collected among homeless persons in Marseille, France. In February 2014 we enrolled 114 sheltered homeless adults who completed questionnaires and had rectal samples collected. Eight types of enteric bacteria and 15 antibiotic resistance genes (ARGs) were sought by real-time polymerase chain reaction (qPCR) performed directly on rectal samples. ARG-positive samples were further tested by conventional PCR and sequencing. We evidenced a 17.5% prevalence of gastrointestinal symptoms, a 9.6% prevalence of enteric pathogenic bacteria carriage, including Escherichia coli pathotypes (8.7%) and Tropheryma whipplei (0.9%). Only 2 persons carried blaCTX-M-15 resistance genes (1.8%), while other genes, including carbapenemase-encoding genes and colistin-resistance genes, (mcr-1 to mcr-6, mcr-8) were not detected. Our results suggest that sheltered homeless persons in Marseille do not have a high risk of harbouring gastrointestinal antibiotic resistant bacteria.

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Cover Acta Microbiologica et Immunologica Hungarica
Acta Microbiologica et Immunologica Hungarica A Quarterly of the Hungarian Academy of Sciences
Print ISSN:
1217-8950
Online ISSN:
1588-2640

 

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Senior editors

Editor-in-Chief: Prof. Dóra Szabó (Institute of Medical Microbiology, Semmelweis University, Budapest, Hungary)

Managing Editor: Dr. Béla Kocsis (Institute of Medical Microbiology, Semmelweis University, Budapest, Hungary)

Co-editor: Dr. Andrea Horváth (Institute of Medical Microbiology, Semmelweis University, Budapest, Hungary)

Editorial Board

  • Prof. Éva ÁDÁM (Institute of Medical Microbiology, Semmelweis University, Budapest, Hungary)
  • Prof. Sebastian AMYES (Department of Medical Microbiology, University of Edinburgh, Edinburgh, UK.)
  • Dr. Katalin BURIÁN (Institute of Clinical Microbiology University of Szeged, Szeged, Hungary; Department of Medical Microbiology and Immunobiology, University of Szeged, Szeged, Hungary.)
  • Dr. Orsolya DOBAY (Institute of Medical Microbiology, Semmelweis University, Budapest, Hungary)
  • Prof. Ildikó Rita DUNAY (Institute of Inflammation and Neurodegeneration, Medical Faculty, Otto-von-Guericke University, Magdeburg, Germany; Center for Behavioral Brain Sciences (CBBS), Magdeburg, Germany)
  • Prof. Levente EMŐDY(Department of Medical Microbiology and Immunology, University of Pécs, Pécs, Hungary.)
  • Prof. Anna ERDEI (Department of Immunology, Eötvös Loránd University, Budapest, Hungary, MTA-ELTE Immunology Research Group, Eötvös Loránd University, Budapest, Hungary.)
  • Prof. Éva Mária FENYŐ (Division of Medical Microbiology, University of Lund, Lund, Sweden)
  • Prof. László FODOR (Department of Microbiology and Infectious Diseases, University of Veterinary Medicine, Budapest, Hungary)
  • Prof. József KÓNYA (Department of Medical Microbiology, University of Debrecen, Debrecen, Hungary)
  • Prof. Yvette MÁNDI (Department of Medical Microbiology and Immunobiology, University of Szeged, Szeged, Hungary)
  • Prof. Károly MÁRIALIGETI (Department of Microbiology, Eötvös Loránd University, Budapest, Hungary)
  • Prof. János MINÁROVITS (Department of Oral Biology and Experimental Dental Research, University of Szeged, Szeged, Hungary)
  • Prof. Béla NAGY (Centre for Agricultural Research, Institute for Veterinary Medical Research, Budapest, Hungary.)
  • Prof. István NÁSZ (Institute of Medical Microbiology, Semmelweis University, Budapest, Hungary)
  • Prof. Kristóf NÉKÁM (Hospital of the Hospitaller Brothers in Buda, Budapest, Hungary.)
  • Dr. Eszter OSTORHÁZI (Institute of Medical Microbiology, Semmelweis University, Budapest, Hungary)
  • Prof. Rozália PUSZTAI (Department of Medical Microbiology and Immunobiology, University of Szeged, Szeged, Hungary)
  • Prof. Peter L. RÁDY (Department of Dermatology, University of Texas, Houston, Texas, USA)
  • Prof. Éva RAJNAVÖLGYI (Department of Immunology, Faculty of Medicine, University of Debrecen, Debrecen, Hungary)
  • Prof. Ferenc ROZGONYI (Institute of Laboratory Medicine, Semmelweis University, Budapest, Hungary)
  • Prof. Joseph G. SINKOVICS (The Cancer Institute, St. Joseph’s Hospital, Tampa, Florida, USA)
  • Prof. Júlia SZEKERES (Department of Medical Biology, University of Pécs, Pécs, Hungary.)
  • Prof. Mária TAKÁCS (National Reference Laboratory for Viral Zoonoses, National Public Health Center, Budapest, Hungary.)
  • Prof. Edit URBÁN (Department of Medical Microbiology and Immunology University of Pécs, Pécs, Hungary; Institute of Translational Medicine, University of Pécs, Pécs, Hungary.)

 

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2022  
Web of Science  
Total Cites
WoS		 689
Journal Impact Factor 1.5
Rank by Impact Factor

Immunology (Q4)
Microbiology (Q4)
Impact Factor
without
Journal Self Cites		 1.3
5 Year
Impact Factor		 1.7
Journal Citation Indicator 0.34
Rank by Journal Citation Indicator

Immunology (Q4)
Microbiology (Q4)
Scimago  
Scimago
H-index		 31
Scimago
Journal Rank		 0.333
Scimago Quartile Score

Immunology and Microbiology (miscellaneous) (Q3)
Infectious Diseases (Q3)
Medicine (miscellaneous) (Q3)
Microbiology (medical) (Q3)
Scopus  
Scopus
Cite Score		 2.8
Scopus
CIte Score Rank		 General Immunology and Microbiology 29/53 (46th PCTL)
Infectious Diseases 186/304 (38th PCTL)
Microbiology 85/124 (31st PCTL)
Scopus
SNIP		 0.484

2021  
Web of Science  
Total Cites
WoS		 696
Journal Impact Factor 2,298
Rank by Impact Factor Immunology 141/161
Microbiology 118/136
Impact Factor
without
Journal Self Cites		 2,143
5 Year
Impact Factor		 1,925
Journal Citation Indicator 0,39
Rank by Journal Citation Indicator Immunology 146/177
Microbiology 129/157
Scimago  
Scimago
H-index		 29
Scimago
Journal Rank		 0,362
Scimago Quartile Score Immunology and Microbiology (miscellaneous) (Q3)
Medicine (miscellaneous) (Q3)
Scopus  
Scopus
Cite Score		 3,6
Scopus
CIte Score Rank		 General Immunology and Microbiology 26/56 (Q2)
Infectious Diseases 149/295 (Q3)
Microbiology (medical) 66/118 (Q3)
Scopus
SNIP		 0,598

2020  
Total Cites 662
WoS
Journal
Impact Factor		 2,048
Rank by Immunology 145/162(Q4)
Impact Factor Microbiology 118/137 (Q4)
Impact Factor 1,904
without
Journal Self Cites
5 Year 0,671
Impact Factor
Journal  0,38
Citation Indicator  
Rank by Journal  Immunology 146/174 (Q4)
Citation Indicator  Microbiology 120/142 (Q4)
Citable 42
Items
Total 40
Articles
Total 2
Reviews
Scimago 28
H-index
Scimago 0,439
Journal Rank
Scimago Immunology and Microbiology (miscellaneous) Q4
Quartile Score Medicine (miscellaneous) Q3
Scopus 438/167=2,6
Scite Score  
Scopus General Immunology and Microbiology 31/45 (Q3)
Scite Score Rank  
Scopus 0,760
SNIP
Days from  225
submission
to acceptance
Days from  118
acceptance
to publication
Acceptance 19%
Rate

2019  
Total Cites
WoS		 485
Impact Factor 1,086
Impact Factor
without
Journal Self Cites		 0,864
5 Year
Impact Factor		 1,233
Immediacy
Index		 0,286
Citable
Items		 42
Total
Articles		 40
Total
Reviews		 2
Cited
Half-Life		 5,8
Citing
Half-Life		 7,7
Eigenfactor
Score		 0,00059
Article Influence
Score		 0,246
% Articles
in
Citable Items		 95,24
Normalized
Eigenfactor		 0,07317
Average
IF
Percentile		 7,690
Scimago
H-index		 27
Scimago
Journal Rank		 0,352
Scopus
Scite Score		 320/161=2
Scopus
Scite Score Rank		 General Immunology and Microbiology 35/45 (Q4)
Scopus
SNIP		 0,492
Acceptance
Rate		 16%

 

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Acta Microbiologica et Immunologica Hungarica
Language English
Size A4
Year of
Foundation		 1954
Volumes
per Year		 1
Issues
per Year		 4
Founder Magyar Tudományos Akadémia
Founder's
Address		 H-1051 Budapest, Hungary, Széchenyi István tér 9.
Publisher Akadémiai Kiadó
Publisher's
Address		 H-1117 Budapest, Hungary 1516 Budapest, PO Box 245.
Responsible
Publisher		 Chief Executive Officer, Akadémiai Kiadó
ISSN 1217-8950 (Print)
ISSN 1588-2640 (Online)

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