Authors:
A. J. Dudnikov Institute of Cytology and Genetics, Novosibirsk 630090 Russia

Search for other papers by A. J. Dudnikov in
Current site
Google Scholar
PubMed
Close
,
G. V. Vasiliev Institute of Cytology and Genetics, Novosibirsk 630090 Russia

Search for other papers by G. V. Vasiliev in
Current site
Google Scholar
PubMed
Close
,
M. Hao Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, Sichuan, China

Search for other papers by M. Hao in
Current site
Google Scholar
PubMed
Close
,
D.-C. Liu Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, Sichuan, China

Search for other papers by D.-C. Liu in
Current site
Google Scholar
PubMed
Close
,
F. Xing Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, Sichuan, China

Search for other papers by F. Xing in
Current site
Google Scholar
PubMed
Close
,
M. Mansouri Department of Agricultural Biotechnology, Faculty of Agriculture, Shahid Bahonar University of Kerman, Kerman, Iran

Search for other papers by M. Mansouri in
Current site
Google Scholar
PubMed
Close
,
D. A. Afonnikov Institute of Cytology and Genetics, Novosibirsk 630090 Russia

Search for other papers by D. A. Afonnikov in
Current site
Google Scholar
PubMed
Close
, and
N. A. Shmakov Institute of Cytology and Genetics, Novosibirsk 630090 Russia

Search for other papers by N. A. Shmakov in
Current site
Google Scholar
PubMed
Close
Restricted access

40 accessions of Aegilops tauschii Coss. specially chosen to present as much of the species variability as possible in such sample were used to build a phylogenetic tree based on transcriptomes sequences. The tree displays subdivision of Ae. tauschii into TauL1, TauL2 and TauL3 gene-pools, and also into subsp. tauschii (TauL1) and subsp. strangulata (TauL2 + TauL3). TauL3 does not look as an outlier. Both subsp. strangulata and subsp. tauschii are highly variable. Accessions from all clades of subsp. tauschii and some clades of subsp. strangulata have disjoint patterns of geographic occurrence, while some of subsp. strangulata clades correspond to particular geographical regions. No special separate clade was formed by some accessions of Ae. tauschii subsp. tauschii from Yellow River region.

  • Dudnikov, A. J. (1998): Allozyme variation in Transcaucasian populations of Aegilops squarrosa. – Heredity 80: 248-258.

  • Dudnikov, A. J. (2012): Chloroplast DNA non-coding sequences variation in Aegilops tauschii Coss.: evolutionary history of the species.–Genet. Resour. Crop Evol. 59: 683699.

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Dudnikov, A. J. (2014): Aegilops tauschii Coss.: allelic variation of enzyme-encoding genes and ecological differentiation of the species.–Genet. Resour. Crop Evol. 61: 13291344.

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Dudnikov, A. J. (2017): Polymorphism of Got2 DNA sequences sheds light on Aegilops tauschii Coss. intraspecies divergence and origin of Triticum aestivum L.–Genet. Resour. Crop Evol. 64: 16231640.

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Dudnikov, A. J. (2019): Aegilops tauschii Coss. chloroplast genome phylogeny.–J. Plant Biochem. Biotechnol. 28: 245252.

  • Dudnikov, A. J. (2021): Aegilops tauschii Coss. molecular phylogeny: nuclear gene Got2 versus chloroplast DNA data.–Genet. Resour. Crop Evol. 68: 24692482.

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Dudnikov, A. J. (2023): Aegilops tauschii Coss. molecular phylogeny in comparison with proteins electrophoretic polymorphism.–Acta Biol. Sibirica 9: 11671180.

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Dudnikov, A. J. and Kawahara, T. (2006): Aegilops tauschii: genetic variation in Iran.–Genet. Resour. Crop Evol. 53: 579586.

  • Dudnikov, A. J., Hao, M. and Liu, D. (2023): Genetic variation in local populations of Aegilops tauschii Coss. helps to elucidate the evolutionary history of the species. –Genet. Resour. Crop Evol. 70: 23672373.

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Eig, A. (1929): Monographisch-kritische Übersicht der Gattung Aegilops.–Feddes Repert., Beih. 55: 1228.

  • Grabherr, M. G., Haas, B. J., Yassour, M., Levin, J. Z., Thompson, D. A., Amit, I., Adiconis, X., Fan, L., Raychowdhury, R., Zeng, Q.-D., Chen, Z., Mauceli, E., Hacohen, N., Gnirke, A., Rhind, N., di Palma, F., Birren, B. W., Nusbaum, C., Lindblad-Toh, K., Friedman, N. and Regev, A. (2011): Full-length transcriptome assembly from RNAseq data without a reference genome.–Nature Biotechnol. 29 7: 644652.

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Haas, B. J., Papanicolaou, A., Yassour, M., Grabherr, M., Blood, P. D., Bowden, J., Couger, M. B., Eccles, D., Li, B., Lieber, M., MacManes, M. D., Ott, M., Orvis, J., Pochet, N., Strozzi, F., Weeks, N., Westerman, R., William, T., Dewey, C. N., Henschel, R., LeDuc, R. D., Friedman, N. and Regev, A. (2013): De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.–Nature Protocols 8(8): 14941512.

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Kilian, B., Mammen, K., Millet, E., Sharma, R., Graner, A., Salamini, F., Hammer, K. and Ozkan, H. (2011): Aegilops. – In: Kole, C. (ed.): Wild crop relatives: genomic and breeding resources. Cereals. Springer, Berlin, pp. 176.

    • Search Google Scholar
    • Export Citation
  • Kimber, G. and Feldman, M. (1987): Wild wheat. An introduction.–Special report 353. College of Agricultural University of Missouri, Columbia, pp. 1142.

    • Search Google Scholar
    • Export Citation
  • Li, H. (2018): Minimap2: pairwise alignment for nucleotide sequences.–Bioinformatics 34(18): 30943100.

  • Martin, M. (2011): Cutadapt removes adapter sequences from high-throughput sequencing reads.–EMBnet. J. 17: 1012.

  • Matsuoka, Y., Nasuda, S., Ashida, Y., Nitta, M., Tsujimoto, H., Takumi, S. and Kawahara, T. (2013): Genetic basis for spontaneous hybrid genome doubling during allopolyploid speciation of common wheat shown by natural variation analyses of the paternal species. – PLoS ONE 8: e68310,

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Mizuno, N., Yamasaki, M., Matsuoka, Y., Kawahara, T. and Takumi, S. (2010): Population structure of wild wheat D-genome progenitor Aegilops tauschii Coss.: implications for intraspecific lineage diversification and evolution of common wheat.–Mol. Ecol. 19: 9991013.

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Pestsova, E., Korzun, V., Goncharov, N. P., Hammer, K., Ganal, M. W. and Roder, M. S. (2000): Microsatellite analysis of Aegilops tauschii germplasm.–Theor. Appl. Genet. 101: 100106.

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Saitou, N. (2018): Introduction to evolutionary genomics. Computational biology. 2nd ed. – Springer Nature Switzerland AG.

  • Saeidi, H., Tabatabaei, B. E. S., Rahimmalek, M., Talebi-Badaf, M. and Rahiminejad, M. R. (2008): Genetic diversity and gene-pool subdivisions of diploid D-genome Aegilops tauschii Coss. (Poaceae) in Iran as revealed by AFLP.–Genet. Resour. Crop. Evol. 55: 12311238.

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Sohail, Q., Shehzad, T., Kilian, A., Eltayeb, A. E., Tanaka, H. and Tsujimoto, H. (2012): Development of diversity array technology (DArT) markers for assessment of population structure and diversity in Aegilops tauschii.–Breeding Science 62: 3845.

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Subramanian, S., Ramasamy, U. and Chen, D. (2019): VCF2PopTree: a client-side software to construct population phylogeny from genome-wide SNPs. – Peer. J. 7: e8213

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Takumi, S., Mizuno, N., Okumura, Y., Kawahara, T. and Matsuoka, Y. (2008): Two major lineages of Aegilops tauschii Coss. revealed by nuclear DNA variation analysis. – In: Appels, R. et al. (eds): The 11th International Wheat Genetics Symposium proceedings, (http://hdl.handle.net/2123/3432). Sydney University Press, Sydney, Australia.

    • Search Google Scholar
    • Export Citation
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A. and Kumar, S. (2013): MEGA6: molecular evolutionary genetics analysis, Vers. 6.0.–Mol. Biol. Evol. 30: 27252729.

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Wang, J., Luo, M., Chen, Z., You, F., Wei, Y., Zheng, Y. and Dvorak, J. (2013): Aegilops tauschii single nucleotide polymorphisms shed light on the origins of wheat D-genome genetic diversity and pinpoint the geographic origin of hexaploid wheat.–New Phytol. 198: 925937.

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Zhao, L., Ning, S., Yi, Y., Zhang, L., Yuan, Z., Wang, J., Zheng, Y., Hao, M. and Liu, D. (2018): Fluorescence in situ hybridization karyotyping reveals the presence of two distinct genomes in the taxon Aegilops tauschii. – BMC Genomics 19: 3

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Zhou, Y., Bai, S., Li, H., Sun, G., Zhang, D., Ma, F., Zhao, X., Nie, F., Li, J., Chen, L., Lv, L., Zhu, L., Fan, R., Ge, Y., Shaheen, A., Guo, G., Zhang, Z., Ma, J., Liang, H., Qiu, X., Hu, J., Sun, T., Hou, J., Xu, H., Xue, S., Jiang, W., Huang, J., Li, S., Zou, C. and Song, C. (2021): Introgressing the Aegilops tauschii genome into wheat as a basis for cereal improvement.–Nature Plants 7: 774786.

    • Crossref
    • Search Google Scholar
    • Export Citation
  • Collapse
  • Expand

Senior editors

Managing Editors

Editorial Board

  • Gy. BORBÉLY (Debrecen)
  • A. ČARNY (Ljubljana)
  • A. CSERGŐ (Dublin)
  • B. CZÚCZ (Paris)
  • M. HÖHN (Budapest)
  • K. T. KISS (Budapest)
  • A. KUZEMKO (Uman)
  • Z. LOSOSOVÁ (Brno)
  • I. MÁTHÉ (Szeged)
  • E. MIHALIK (Szeged)
  • S. ORBÁN (Eger)
  • R. PÁL (Butte)
  • Gy. PINKE (Mosonmagyaróvár)
  • T. PÓCS (Eger)
  • K. PRACH (České Budejovice)
  • E. S. RAUSCHERT (Cleveland)
  • E. RUPRECHT (Cluj Napoca)
  • G. SRAMKÓ (Debrecen)
  • A. T. SZABÓ (Veszprém)
  • É. SZŐKE (Budapest)
  • B. TOKARSKA-GUZIK (Katowice)
  • B. TÓTHMÉRÉSZ (Debrecen)
  • P. TÖRÖK (Debrecen)

Botta-Dukát, Zoltán
E-mail: botta-dukat.zoltan@okologia.mta.hu

or

Lőkös, László
E-mail: acta@bot.nhmus.hu
Institute: Botanical Department, Hungarian Natural History Museum
Address: Könyves K. krt. 40. H-1097 Budapest, Hungary

  • Scopus
  • Biological Abstracts
  • BIOSIS Previews
  • CAB Abstracts
  • CABELLS Journalytics
  • Chemical Abstracts
  • Global Health
  • Referativnyi Zhurnal

 

2024  
Scopus  
CiteScore  
CiteScore rank  
SNIP  
Scimago  
SJR index 0.222
SJR Q rank Q3

2023  
Scopus  
CiteScore 1.7
CiteScore rank Q3 (Plant Science)
SNIP 0.749
Scimago  
SJR index 0.24
SJR Q rank Q3

Acta Botanica Hungarica
Publication Model Hybrid
Submission Fee none
Article Processing Charge 900 EUR/article (only for OA publications)
Printed Color Illustrations 40 EUR (or 10 000 HUF) + VAT / piece
Regional discounts on country of the funding agency World Bank Lower-middle-income economies: 50%
World Bank Low-income economies: 100%
Further Discounts Editorial Board / Advisory Board members: 50%
Corresponding authors, affiliated to an EISZ member institution subscribing to the journal package of Akadémiai Kiadó: 100%
Subscription fee 2025 Online subsscription: 696 EUR / 764 USD
Print + online subscription: 788 EUR / 868 USD
Subscription Information Online subscribers are entitled access to all back issues published by Akadémiai Kiadó for each title for the duration of the subscription, as well as Online First content for the subscribed content.
Purchase per Title Individual articles are sold on the displayed price.

Acta Botanica Hungarica
Language English
French
German
Russian
Spanish
Size B5
Year of
Foundation
1954
Volumes
per Year
1
Issues
per Year
4
Founder Magyar Tudományos Akadémia
Founder's
Address
H-1051 Budapest, Hungary, Széchenyi István tér 9.
Publisher Akadémiai Kiadó
Publisher's
Address
H-1117 Budapest, Hungary 1516 Budapest, PO Box 245.
Responsible
Publisher
Chief Executive Officer, Akadémiai Kiadó
ISSN 0236-6495 (Print)
ISSN 1588-2578 (Online)

 

Monthly Content Usage

Abstract Views Full Text Views PDF Downloads
Nov 2024 0 0 0
Dec 2024 25649 4 4
Jan 2025 18848 4 3
Feb 2025 368 1 2
Mar 2025 222 2 3
Apr 2025 54 0 0
May 2025 15 0 0