Cereal Research Communications
Volume/Issue:
Volume 39: Issue 1
Characterization of wheat yellow rust resistance gene Yr17 using EST-SSR and rice syntenic region
Authors:
J. Jia University of Electronic Science and Technology of China School of Life Science and Technology Chengdu 610054 P. R. China

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G. Li University of Electronic Science and Technology of China School of Life Science and Technology Chengdu 610054 P. R. China

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C. Liu University of Electronic Science and Technology of China School of Life Science and Technology Chengdu 610054 P. R. China

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M. Lei University of Electronic Science and Technology of China School of Life Science and Technology Chengdu 610054 P. R. China

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Z. Yang University of Electronic Science and Technology of China School of Life Science and Technology Chengdu 610054 P. R. China

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Pages:
88–99
Online Publication Date:
09 Mar 2011
Publication Date:
01 Mar 2011
Article Category:
Research Article
DOI:
https://doi.org/10.1556/crc.39.2011.1.9
Keywords:
EST; SCAR markers; wheat yellow rust; rice synteny
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Wheat yellow rust resistance gene Yr17 was originated from the wheat-Aegilops ventricosa introgression, and still effective on the adult plant in Southern China. The previous studies located the gene Yr17 on the translocation of 2NS-2AS using the molecular and cytological markers. In the present study, we screened new PCR-based markers to map the gene Yr17 region from the investigation of a segregating 120 F2 population. All markers including four EST-PCR markers, a SCAR (sequence characterized amplified region) and a PLUG (PCR based landmark unique gene) marker specific to Yr17 gene were mapped on the chromosome 2AS, and located on the chromosomal deletion bin 2AS5-0.8–1.00 region. Based on the wheat-rice collinearity, we found that the sequences of the Yr17 gene linked markers were comparatively matched at rice chromosome 4 and chromosome 7. However, the identified closely linked genomic sequence of Yr17 gene is most likely collinear with genomic region of rice chromosome 4. The newly produced PCR based markers closely linked to Yr17 gene will be useful for the marker-assisted selection in wheat breeding for rust resistance.

  • Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.J. 1997. Anew generation of protein database search programs. Nucleic Acids Res. 25:3389–3402.

    Lipman D.J. , 'Anew generation of protein database search programs ' (1997 ) 25 Nucleic Acids Res. : 3389 -3402 .

    • Search Google Scholar

  • Bariana, H.S., McIntosh, R.A. 1993. Cytogenetic studies in wheat. XV. Location of rust resistance genes in VPM1 and their genetic linkage with other disease resistance genes in chromosome 2A. Genome 36:476–482.

    McIntosh R.A. , 'Cytogenetic studies in wheat. XV. Location of rust resistance genes in VPM1 and their genetic linkage with other disease resistance genes in chromosome 2A ' (1993 ) 36 Genome : 476 -482 .

    • Search Google Scholar

  • Bariana, H.S., McIntosh, R.A. 1994. Characterization and origin of rust and powdery mildew resistance genes in VPM1 wheat. Euphytica 76:53–61.

    McIntosh R.A. , 'Characterization and origin of rust and powdery mildew resistance genes in VPM1 wheat ' (1994 ) 76 Euphytica : 53 -61 .

    • Search Google Scholar

  • Bartos, P., Ovesna, J., Hanzalova, A., Chrpova, J., Dumalasova, V., Skorpik, M., Sip, V. 2004. Presence of a translocation from Aegilops ventricosa in wheat cultivars registered in the Czech Republic. Czech J. Genet. Plant Breed. 40:31–35.

    Sip V. , 'Presence of a translocation from Aegilops ventricosa in wheat cultivars registered in the Czech Republic ' (2004 ) 40 Czech J. Genet. Plant Breed. : 31 -35 .

    • Search Google Scholar

  • Błaszczyk, L., Goyeau, H., Huang, X.Q., Röder, M., Stepien, L., Chelkowski, J. 2004. Identifying leaf rust resistance genes and mapping gene Lr37 on the microsatellite map of wheat. Cell. Mol. Biol. Lett. 9:869–878.

    Chelkowski J. , 'Identifying leaf rust resistance genes and mapping gene Lr37 on the microsatellite map of wheat ' (2004 ) 9 Cell. Mol. Biol. Lett. : 869 -878 .

    • Search Google Scholar

  • Carollo, V., Matthews, D.E., Lazo, G.R., Blake, T.K., Hummel, D.D., Lui, N., Hane, D.L., Anderson, O.D. 2005. GrainGenes 2.0. an improved resource for the small-grains community. Plant Physiol. 139:643–651.

    Anderson O.D. , 'GrainGenes 2.0. an improved resource for the small-grains community ' (2005 ) 139 Plant Physiol. : 643 -651 .

    • Search Google Scholar

  • Chantret, N., Cenci, A., Sabot, F., Anderson, O., Dubcovsky, J. 2004. Sequencing of the Triticum monococcum hardness locus reveals good microcolinearity with rice. Mol. Genet. Genomics 271:377–386.

    Dubcovsky J. , 'Sequencing of the Triticum monococcum hardness locus reveals good microcolinearity with rice ' (2004 ) 271 Mol. Genet. Genomics : 377 -386 .

    • Search Google Scholar

  • Conley, E.J., Nduati, V., Gonzalez-Hernandez, J.L., Mesfin, A., Trudeau-Spanjers, M., Chao, S., Lazo, G.R., Hummel, D.D., Anderson, O.D., Qi, L.L., Gill, B.S., Echalier, B., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorák, J., Peng, J.H., Lapitan, N.L., Pathan, M.S., Nguyen, H.T., Ma, X.F., Miftahudin, G.J.P., Greene, R.A., Sorrells, M.E., Hossain, K.G., Kalavacharla, V., Kianian, S.F., Sidhu, D., Dilbirligi, M., Gill, K.S., Choi, D.W., Fenton, R.D., Close, T.J., McGuire, P.E., Qualset, C.O., Anderson, J.A. 2004. A 2600-locus chromosome bin map of wheat homoeologous group 2 reveals interstitial gene-rich islands and colinearity with rice. Genetics 168:625–637.

    Anderson J.A. , 'A 2600-locus chromosome bin map of wheat homoeologous group 2 reveals interstitial gene-rich islands and colinearity with rice ' (2004 ) 168 Genetics : 625 -637 .

    • Search Google Scholar

  • Devos, K.M. 2005. Updating the ‘Crop Circle’. Curr. Opin. Plant Biol. 8:155–162.

    Devos K.M. , 'Updating the ‘Crop Circle’ ' (2005 ) 8 Curr. Opin. Plant Biol. : 155 -162 .

    • Search Google Scholar

  • Fedak, G. 1999. Molecular aids for integration of alien chromatin through wide crosses. Genome 42:584–591.

    Fedak G. , 'Molecular aids for integration of alien chromatin through wide crosses ' (1999 ) 42 Genome : 584 -591 .

    • Search Google Scholar

  • Francki, M., Carter, M., Ryan, K., Hunter, A., Bellgard, M., Appels, R. 2004. Comparative organization of wheat homoeologous group 3S and 7L using wheat-rice synteny and identification of potential markers for genes controlling xanthophyll content in wheat. Funct. Integr. Genomics 4:118–130.

    Appels R. , 'Comparative organization of wheat homoeologous group 3S and 7L using wheat-rice synteny and identification of potential markers for genes controlling xanthophyll content in wheat ' (2004 ) 4 Funct. Integr. Genomics : 118 -130 .

    • Search Google Scholar

  • Friebe, B., Jiang, J.M., Raupp, W.J., McIntosh, R.A., Gill, B.S. 1996. Characterization of wheat-alien translocations conferring resistance to diseases and pests: current status. Euphytica 91:59–87.

    Gill B.S. , 'Characterization of wheat-alien translocations conferring resistance to diseases and pests: current status ' (1996 ) 91 Euphytica : 59 -87 .

    • Search Google Scholar

  • Gale, M.D., Devos, K.M. 1998. Comparative genetics in the grasses. Proc. Natl. Acad. Sci. USA 95:1971–1974.

    Devos K.M. , 'Comparative genetics in the grasses ' (1998 ) 95 Proc. Natl. Acad. Sci. USA : 1971 -1974 .

    • Search Google Scholar

  • Helguera, M., Khan, I., Kolmer, J., Lijavetzky, D., Li, Z.Q., Dubcovsky, J. 2003. PCR assays for the Lr37-Yr17-Sr38 cluster of rust resistance genes and their use to develop isogenic hard red spring wheat line. Crop Sci. 43:1839–1847.

    Dubcovsky J. , 'PCR assays for the Lr37-Yr17-Sr38 cluster of rust resistance genes and their use to develop isogenic hard red spring wheat line ' (2003 ) 43 Crop Sci. : 1839 -1847 .

    • Search Google Scholar

  • Ishikawa, G., Nakamura, T., Ashida, T., Saito, M., Nasuda, S., Endo, T.R., Wu, J., Matsumoto, T. 2009. Localization of anchor loci representing five hundred annotated rice genes to wheat chromosomes using PLUG markers. Theor. Appl. Genet. 118:499–514.

    Matsumoto T. , 'Localization of anchor loci representing five hundred annotated rice genes to wheat chromosomes using PLUG markers ' (2009 ) 118 Theor. Appl. Genet. : 499 -514 .

    • Search Google Scholar

  • Jahier, J., Abelard, P., Tanguy, A.M., Dedryver, F., Rivoal, R., Khatkar, S., Bariana, H.S. 2001. The Aegilops ventricosa segment on chromosome 2AS of the wheat cultivar ‘VPM1’ carries the cereal cyst nematode resistance gene Cre5. Plant Breeding 120:125–128.

    Bariana H.S. , 'The Aegilops ventricosa segment on chromosome 2AS of the wheat cultivar ‘VPM1’ carries the cereal cyst nematode resistance gene Cre5 ' (2001 ) 120 Plant Breeding : 125 -128 .

    • Search Google Scholar

  • Kolmer, J.A. 1996. Genetics of resistance to wheat leaf rust. Annu. Rev. Phytopathol. 34:435–455.

    Kolmer J.A. , 'Genetics of resistance to wheat leaf rust ' (1996 ) 34 Annu. Rev. Phytopathol. : 435 -455 .

    • Search Google Scholar

  • Lagudah, E., McFadden, H., Singh, R., Huerta-Espino, J., Bariana, H., Spielmeyer, W. 2006. Molecular genetic characterization of the Lr34/Yr18 slow rusting resistance gene region in wheat. Theor. Appl. Genet. 114:21–30.

    Spielmeyer W. , 'Molecular genetic characterization of the Lr34/Yr18 slow rusting resistance gene region in wheat ' (2006 ) 114 Theor. Appl. Genet. : 21 -30 .

    • Search Google Scholar

  • Lander, E.S., Green, P., Abrahamsom, J., Barlow, A., Daly, M.J., Linsoln, S.E., Newbrug, L.A. 1987. MAPMAKER: An interactive computer package for construction of primary genetic linkage maps of experimental and natural populations. Genomics 1:174–181.

    Newbrug L.A. , 'MAPMAKER: An interactive computer package for construction of primary genetic linkage maps of experimental and natural populations ' (1987 ) 1 Genomics : 174 -181 .

    • Search Google Scholar

  • Li, G.R., Yang, Z.J., Liu, M.J. 2000. Utilization of CIMMYT germplasm to Sichuan wheat breeding for quality. J. Sichuan Agricultural University 18:210–214.

    Liu M.J. , 'Utilization of CIMMYT germplasm to Sichuan wheat breeding for quality ' (2000 ) 18 J. Sichuan Agricultural University : 210 -214 .

    • Search Google Scholar

  • Maia, N. 1967. Obtention des bles tendres resistants au pietin-verse par croisements interspecifiques bles × Aegilops. C. R. Acad. Agric. Fr. 53:149–154 (in French).

    Maia N. , 'Obtention des bles tendres resistants au pietin-verse par croisements interspecifiques bles × Aegilops ' (1967 ) 53 C. R. Acad. Agric. Fr. : 149 -154 .

    • Search Google Scholar

  • McIntosh, R.A., Wellings, C.R., Park, R.F. 1995. Wheat Rust — An Atlas of Resistance Genes. CSIRO Publications, Melbourne, 200 pp.

    Park R.F. , '', in Wheat Rust — An Atlas of Resistance Genes , (1995 ) -.

  • Michelmore, R.M., Paran, I., Kesseli, R.V. 1991. Identification of markers linked to disease-resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomic regions by using segregating populations. Proc. Natl. Acad. Sci. USA 88:9828–9832.

    Kesseli R.V. , 'Identification of markers linked to disease-resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomic regions by using segregating populations ' (1991 ) 88 Proc. Natl. Acad. Sci. USA : 9828 -9832 .

    • Search Google Scholar

  • Moore, G., Devos, K.M., Wang, Z., Gale, M.D. 1995. Grasses, line up and form a circle. Curr. Biol. 5:737–739.

    Gale M.D. , 'Grasses, line up and form a circle ' (1995 ) 5 Curr. Biol. : 737 -739 .

  • Plaschke, J.B., Börner, A., Wendehake, K., Ganal, M.W., Röder, M.S. 1996. The use of wheat aneuploids for the chromosomal assignment of microsatellite loci. Euphytica 89:33–40.

    Röder M.S. , 'The use of wheat aneuploids for the chromosomal assignment of microsatellite loci ' (1996 ) 89 Euphytica : 33 -40 .

    • Search Google Scholar

  • Ramakrishna, W., Dubcovsky, J., Park, Y.J., Busso, C., Emberton, J., SanMiguel, P., Bennetzen, J.L. 2002. Different types and rates of genome evolution de tected by comparative sequence analysis of orthologous segments from four cereal genomes. Genetics 162:1389–1400.

    Bennetzen J.L. , 'Different types and rates of genome evolution de tected by comparative sequence analysis of orthologous segments from four cereal genomes ' (2002 ) 162 Genetics : 1389 -1400 .

    • Search Google Scholar

  • Rhoné, B., Raquin, A.L., Goldringer, I. 2007. Strong linkage disequilibrium near the selected Yr17 resistance gene in a wheat experimental population. Theor. Appl. Genet. 114:787–802.

    Goldringer I. , 'Strong linkage disequilibrium near the selected Yr17 resistance gene in a wheat experimental population ' (2007 ) 114 Theor. Appl. Genet. : 787 -802 .

    • Search Google Scholar

  • Robert, O., Abelard, C., Dedryver, F. 1999. Identification of molecular markers for the detection of the yellow rust resistance gene Yr17 in wheat. Mol. Breeding 5:167–175.

    Dedryver F. , 'Identification of molecular markers for the detection of the yellow rust resistance gene Yr17 in wheat ' (1999 ) 5 Mol. Breeding : 167 -175 .

    • Search Google Scholar

  • Röder, M.S., Korzun, V., Wendehake, K., Plaschke, J., Tixier, M.H., Leroy, P., Ganal, M.W. 1998. A microsatellite map of wheat. Genetics 149:2007–2023.

    Ganal M.W. , 'A microsatellite map of wheat ' (1998 ) 149 Genetics : 2007 -2023 .

  • Seah, S., Bariana, H., Jahier, J., Sivasithamparam, K., Lagudah, E.S. 2001. The introgressed segment carrying rust resistance genes Yr17, Lr37 and Sr38 in wheat can be assayed by a cloned disease resistance gene-like sequence. Theor. Appl. Genet. 102:600–605.

    Lagudah E.S. , 'The introgressed segment carrying rust resistance genes Yr17, Lr37 and Sr38 in wheat can be assayed by a cloned disease resistance gene-like sequence ' (2001 ) 102 Theor. Appl. Genet. : 600 -605 .

    • Search Google Scholar

  • Xue, S., Zhang, Z., Lin, F., Kong, Z., Cao, Y., Li, C., Yi, H., Mei, M., Zhu, H., Wu, J., Xu, H., Zhao, D., Tian, D., Zhang, C., Ma, Z. 2008. A high-density intervarietal map of the wheat genome enriched with markers derived from expressed sequence tags. Theor. Appl. Genet. 117:181–189.

    Ma Z. , 'A high-density intervarietal map of the wheat genome enriched with markers derived from expressed sequence tags ' (2008 ) 117 Theor. Appl. Genet. : 181 -189 .

    • Search Google Scholar

  • Yan, L., Loukoianov, A., Tranquilli, G., Helguera, M., Fahima, T., Dubcovsky, J. 2003. Positional cloning of the wheat vernalization gene VRN1. Proc. Natl. Acad. Sci. USA 100:6263–6268.

    Dubcovsky J. , 'Positional cloning of the wheat vernalization gene VRN1 ' (2003 ) 100 Proc. Natl. Acad. Sci. USA : 6263 -6268 .

    • Search Google Scholar

  • Yang, Z.J., Li, G.R., Feng, J., Jiang, H.R., Ren, Z.L. 2005. Molecular cytogenetic characterization and disease resistance observation of wheat-Dasypyrum breviaristatum partial amphiploid and its derivatives. Hereditas 142:80–85.

    Ren Z.L. , 'Molecular cytogenetic characterization and disease resistance observation of wheat-Dasypyrum breviaristatum partial amphiploid and its derivatives ' (2005 ) 142 Hereditas : 80 -85 .

    • Search Google Scholar
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Cover Cereal Research Communications
Cereal Research Communications A Quarterly of the Cereal Research Non-Profit Ltd. Company
Print ISSN:
0133-3720
Online ISSN:
1788-9170

 

 

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Cereal Research Communications
Language English
Size A4
Year of
Foundation		 1973
Volumes
per Year		 1
Issues
per Year		 4
Founder Akadémiai Kiadó
Founder's
Address		 H-1117 Budapest, Hungary 1516 Budapest, PO Box 245
Publisher Akadémiai Kiadó
Springer Nature Switzerland AG
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ISSN 0133-3720 (Print)
ISSN 1788-9170 (Online)

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