Cereal Research Communications
Volume/Issue:
Volume 42: Issue 4
Isolation and characterization of the complete genome of barley yellow dwarf virus-GAV from wheat in Northwestern China
Authors:
S. Song Northwest A&F University State Key Laboratory of Crop Stress Biology for Arid Areas / Key Laboratory of Integrated Pest Management on Crops in Northwestern Loess Plateau, Ministry of Agriculture, Key Laboratory of Plant Protection Resources and Pest Management, Ministry of Education, College of Plant Protection Yangling, Shaanxi 712100 China

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Y. Tao Northwest A&F University State Key Laboratory of Crop Stress Biology for Arid Areas / Key Laboratory of Integrated Pest Management on Crops in Northwestern Loess Plateau, Ministry of Agriculture, Key Laboratory of Plant Protection Resources and Pest Management, Ministry of Education, College of Plant Protection Yangling, Shaanxi 712100 China

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L. Zhao Northwest A&F University State Key Laboratory of Crop Stress Biology for Arid Areas / Key Laboratory of Integrated Pest Management on Crops in Northwestern Loess Plateau, Ministry of Agriculture, Key Laboratory of Plant Protection Resources and Pest Management, Ministry of Education, College of Plant Protection Yangling, Shaanxi 712100 China

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P. Liu Northwest A&F University State Key Laboratory of Crop Stress Biology for Arid Areas / Key Laboratory of Integrated Pest Management on Crops in Northwestern Loess Plateau, Ministry of Agriculture, Key Laboratory of Plant Protection Resources and Pest Management, Ministry of Education, College of Plant Protection Yangling, Shaanxi 712100 China

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Y. Wu Northwest A&F University State Key Laboratory of Crop Stress Biology for Arid Areas / Key Laboratory of Integrated Pest Management on Crops in Northwestern Loess Plateau, Ministry of Agriculture, Key Laboratory of Plant Protection Resources and Pest Management, Ministry of Education, College of Plant Protection Yangling, Shaanxi 712100 China

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Pages:
620–628
Online Publication Date:
15 Jun 2014
Publication Date:
01 Dec 2014
Article Category:
Research Article
DOI:
https://doi.org/10.1556/crc.2014.0006
Keywords:
BYDV-GAV; Northwestern China; complete genome; diversity
Restricted access

Barley yellow dwarf virus-GAV (BYDV-GAV) is one of the most serious viruses on wheat in China. In this study, five BYDV-GAV isolates collected from five regions in Northwestern China were sequenced. The complete genome sequences generated in this study along with nine genome sequences of BYDV-GAV isolates available in GeneBank were compared and analyzed. The comparative analysis indicated that the complete genomes of BYDV-GAV showed a low level of genetic diversity with nucleotide sequence identities ranging between 97.0% and 99.7%, and the RNA-dependent RNA polymerase gene (ORF1 + ORF2) was the most variable within the complete genome. Phylogenetic analysis indicated that the BYDV-GAV isolates in Northwestern China could be divided into two groups. In addition, two potential recombination events were detected among the 14 BYDV-GAV isolates. This study provided a detailed description of molecular characterization of BYDV-GAV in Northwestern China based on the complete genome sequences, which increased the understanding of genetic diversity of barley yellow dwarf viruses.

  • Bisnieks M., Kvarnheden A., Sigvald R., Valkonen J. 2004. Molecular diversity of the coat protein-encoding region of barley yellow dwarf virus-PAV and barley yellow dwarf virus-MAV from Latvia and Sweden. Arch. Virol. 149:843–853.

    Valkonen J. , 'Molecular diversity of the coat protein-encoding region of barley yellow dwarf virus-PAV and barley yellow dwarf virus-MAV from Latvia and Sweden ' (2004 ) 149 Arch. Virol. : 843 -853 .

    • Search Google Scholar

  • Boulila M. 2011. Selective constraints, molecular recombination structure and phylogenetic reconstruction of isometric plant RNA viruses of the families Luteoviridae and Tymoviridae. Biochimie 93:242–253.

    Boulila M. , 'Selective constraints, molecular recombination structure and phylogenetic reconstruction of isometric plant RNA viruses of the families Luteoviridae and Tymoviridae ' (2011 ) 93 Biochimie : 242 -253 .

    • Search Google Scholar

  • Chare E.R., Holmes E.C. 2004. Selection pressures in the capsid genes of plant RNA viruses reflect mode of transmission. J. Gen. Virol. 85:3149–3157.

    Holmes E.C. , 'Selection pressures in the capsid genes of plant RNA viruses reflect mode of transmission ' (2004 ) 85 J. Gen. Virol. : 3149 -3157 .

    • Search Google Scholar

  • Chay C., Smith D., Vaughan R., Gray S. 1996. Diversity among isolates within the PAV serotype of barley yellow dwarf virus. Phytopathol. 86:370–377.

    Gray S. , 'Diversity among isolates within the PAV serotype of barley yellow dwarf virus ' (1996 ) 86 Phytopathol. : 370 -377 .

    • Search Google Scholar

  • Fu Y., Li W. 1993. Statistical tests of neutrality of mutations. Genetics 133:693–709.

    Li W. , 'Statistical tests of neutrality of mutations ' (1993 ) 133 Genetics : 693 -709 .

    • Search Google Scholar

  • Gildow F. 1999. Luteovirus transmission and mechanisms regulating vector specificity. In: Smith H.G., Barker H. (eds), The Luteoviridae. CABI, Wallingford, UK, pp. 88–113.

    Gildow F. , '', in The Luteoviridae , (1999 ) -.

  • Heath L., van der Walt E., Varsani A., Martin D.P. 2006. Recombination patterns in aphthoviruses mirror those found in other picornaviruses. J. Virol. 80:11827–11832.

    Martin D.P. , 'Recombination patterns in aphthoviruses mirror those found in other picornaviruses ' (2006 ) 80 J. Virol. : 11827 -11832 .

    • Search Google Scholar

  • Jeevalatha A., Kaundal P., Shandil R., Sharma N., Chakrabarti S., Singh B. 2013. Complete genome sequence of potato leafroll virus isolates infecting potato in the different geographical areas of India shows low level genetic diversity. Indian J. Virol. 24:199–204.

    Singh B. , 'Complete genome sequence of potato leafroll virus isolates infecting potato in the different geographical areas of India shows low level genetic diversity ' (2013 ) 24 Indian J. Virol. : 199 -204 .

    • Search Google Scholar

  • Jin Z., Wang X., Chang S., Zhou G. 2004. The complete nucleotide sequence and its organization of the genome of barley yellow dwarf virus-GAV. Sci. China Ser. C 47:175–182.

    Zhou G. , 'The complete nucleotide sequence and its organization of the genome of barley yellow dwarf virus-GAV ' (2004 ) 47 Sci. China Ser. C : 175 -182 .

    • Search Google Scholar

  • Librado P., Rozas J. 2009. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451–1452.

    Rozas J. , 'DnaSP v5: A software for comprehensive analysis of DNA polymorphism data ' (2009 ) 25 Bioinformatics : 1451 -1452 .

    • Search Google Scholar

  • Liu P., Zhang L., Zhang H., Jiao H., Wu Y. 2013. Detection and molecular variability of apple stem grooving virus in Shaanxi, China. J. Phytopathol. 161:445–449.

    Wu Y. , 'Detection and molecular variability of apple stem grooving virus in Shaanxi, China ' (2013 ) 161 J. Phytopathol. : 445 -449 .

    • Search Google Scholar

  • Liu Y., Sun B., Wang X., Zheng C., Zhou G. 2007. Three digoxigenin-labeled cDNA probes for specific detection of the natural population of barley yellow dwarf viruses in China by dot-blot hybridization. J. Virol. Methods 145:22–29.

    Zhou G. , 'Three digoxigenin-labeled cDNA probes for specific detection of the natural population of barley yellow dwarf viruses in China by dot-blot hybridization ' (2007 ) 145 J. Virol. Methods : 22 -29 .

    • Search Google Scholar

  • Liu Y., Zhai H., Zhao K., Wu B., Wang X. 2012. Two suppressors of RNA silencing encoded by cereal-infecting members of the family Luteoviridae. J. Gen. Virol. 93:1825–1830.

    Wang X. , 'Two suppressors of RNA silencing encoded by cereal-infecting members of the family Luteoviridae ' (2012 ) 93 J. Gen. Virol. : 1825 -1830 .

    • Search Google Scholar

  • Muhire B., Martin D.P., Brown J.K., Navas-Castillo J., Moriones E., Zerbini F.M., Rivera-Bustamante R., Malathi V., Briddon R.W., Varsani A. 2013. A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae). Arch. Virol. 158:1411–1424.

    Varsani A. , 'A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae) ' (2013 ) 158 Arch. Virol. : 1411 -1424 .

    • Search Google Scholar

  • Oswald J.W., Houston B. 1951. A new virus disease of cereals, transmissible by aphids. Plant Dis. Rep. 11:471–475.

    Houston B. , 'A new virus disease of cereals, transmissible by aphids ' (1951 ) 11 Plant Dis. Rep. : 471 -475 .

    • Search Google Scholar

  • Paul C.P., Barry J.K., Dinesh-Kumar S., Brault V., Miller W.A. 2001. A sequence required for -1 ribosomal frameshifting located four kilobases downstream of the frameshift site. J. Mol. Biol. 310:987–999.

    Miller W.A. , 'A sequence required for -1 ribosomal frameshifting located four kilobases downstream of the frameshift site ' (2001 ) 310 J. Mol. Biol. : 987 -999 .

    • Search Google Scholar

  • Rochow W. 1969. Biological properties of four isolates of barley yellow dwarf virus. Phytopathol. 59:1580–1589.

    Rochow W. , 'Biological properties of four isolates of barley yellow dwarf virus ' (1969 ) 59 Phytopathol. : 1580 -1589 .

    • Search Google Scholar

  • Rochow W., Muller I. 1971. A fifth variant of barley yellow dwarf virus in New York. Plant Dis. Rep. 55:874–877.

    Muller I. , 'A fifth variant of barley yellow dwarf virus in New York ' (1971 ) 55 Plant Dis. Rep. : 874 -877 .

    • Search Google Scholar

  • Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585–595.

    Tajima F. , 'Statistical method for testing the neutral mutation hypothesis by DNA polymorphism ' (1989 ) 123 Genetics : 585 -595 .

    • Search Google Scholar

  • Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731–2739.

    Kumar S. , 'MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods ' (2011 ) 28 Mol. Biol. Evol. : 2731 -2739 .

    • Search Google Scholar

  • Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F. 2011. Dynamics of molecular evolution and phylogeography of barley yellow dwarf virus-PAV. PLoS One 6:e16896.

    Elena S.F. , 'Dynamics of molecular evolution and phylogeography of barley yellow dwarf virus-PAV ' (2011 ) 6 PLoS One : 16896 -.

    • Search Google Scholar

  • Zhai H., Liu Y. 2011. Identification of barley yellow dwarf viruses (BYDVs) strains in Qinghai Province and analysis of evolution based on CP gene. Chinese Agricultural Science Bulletin 24:048. (In Chinese)

    Liu Y. , 'Identification of barley yellow dwarf viruses (BYDVs) strains in Qinghai Province and analysis of evolution based on CP gene ' (2011 ) 24 Chinese Agricultural Science Bulletin : 048 -.

    • Search Google Scholar

  • Zhou G., Zhang S., Rochow W. 1986. Identification of a non-specific strain of WYDV transmitted by greenbug and English grain aphid. Acta Phytopathologica Sinica 16:17–22. (In Chinese)

    Rochow W. , 'Identification of a non-specific strain of WYDV transmitted by greenbug and English grain aphid ' (1986 ) 16 Acta Phytopathologica Sinica : 17 -22 .

    • Search Google Scholar

  • Zhou G., Zhang S., Qian Y. 1987. Identification and application of four strains of wheat yellow dwarf virus. Scientia Agricultura Sinica 20:7–12. (In Chinese)

    Qian Y. , 'Identification and application of four strains of wheat yellow dwarf virus ' (1987 ) 20 Scientia Agricultura Sinica : 7 -12 .

    • Search Google Scholar
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  • Expand
Cover Cereal Research Communications
Cereal Research Communications A Quarterly of the Cereal Research Non-Profit Ltd. Company
Print ISSN:
0133-3720
Online ISSN:
1788-9170

 

 

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Cereal Research Communications
Language English
Size A4
Year of
Foundation		 1973
Volumes
per Year		 1
Issues
per Year		 4
Founder Akadémiai Kiadó
Founder's
Address		 H-1117 Budapest, Hungary 1516 Budapest, PO Box 245
Publisher Akadémiai Kiadó
Springer Nature Switzerland AG
Publisher's
Address		 H-1117 Budapest, Hungary 1516 Budapest, PO Box 245.
CH-6330 Cham, Switzerland Gewerbestrasse 11.
Responsible
Publisher		 Chief Executive Officer, Akadémiai Kiadó
ISSN 0133-3720 (Print)
ISSN 1788-9170 (Online)

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