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  • 1 Bangladesh Rice Research Institute (BRRI), Gazipur-1701, Bangladesh
  • | 2 Bangladesh Rice Research Institute (BRRI), Gazipur-1701, Bangladesh
  • | 3 Bangabandhu Sheikh Mujibur Rahman Agricultural University (BSMRAU), Gazipur-1706, Bangladesh
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Genetic diversity of 28 restorer lines of rice was studied under irrigated condition through Mahalanobis D2 statistics and simple sequence repeat (SSR) banding patterns. The cluster analysis grouped the lines into five clusters. The principal component analysis showed that the first four components with vector values > 1 contributed 76.32% of the total variations. The intra- and inter-cluster distances were the maximum in cluster V (0.86) and between clusters II and V (15.14), respectively. Flag leaf area, plant height, panicle length, five panicle weight, primary branches per panicle and secondary branches per panicle had maximum contribution towards genetic divergence. A total of 24 alleles varied from 2 to 5 with an average of 2.67 alleles per locus were detected for the nine microsatellite markers across 28 lines. The polymorphism information content (PIC) values ranged from 0.12 to 0.71 with an average of 0.29. RM229 was considered as the best markers on the basis of the highest PIC value. Phylogenetic cluster analysis of the SSR data based on distance divided all lines into three groups (A, B and C), whereas the cluster analysis divided these lines into five groups (I, II, III, IV and V). Besides, evaluation of yield contributing traits demonstrated that the restorer lines under the current study possessed a considerable genetic diversity. Potential lines such as BU1IR, China2R, China1R, BHD3R, IR509R and Heera5R can be used as pollen parent in developing new commercial hybrid varieties. Therefore, potential restorer lines need to be conserved in Genebank for future hybrid rice breeding programs.

  • Ahmed, M.S.U., Khalequzzaman, M., Bashar, M.K., Shamsuddin, A.K.M. 2016. Agro-morphological, physicochemical and molecular characterization of rice germplasm with similar names of Bangladesh. Rice Sci. 4: 211218.

    • Search Google Scholar
    • Export Citation
  • AIS. 2018. Krishi Diary, 2018, Agricultural Information Service, Khamarbari, Farmgate, Dhaka-1215, Bangladesh.

  • Akter, N., Islam, M.Z., Siddique, M.A., Chakrabarty, T., Khalequzzaman, M., Chowdhury, M.A.Z. 2016. Genetic diversity of boro rice (Oryza sativa l.) landraces in Bangladesh. Bangladesh J. Pl. Breed. Genet. 2: 3340.

    • Search Google Scholar
    • Export Citation
  • Athwal, D.S., Virmani, S.S. 1972. Cytoplasmic male sterile and hybrid breeding in rice. In: Rice Breeding. IRRI, Manila, Philippines, pp. 615620.

    • Search Google Scholar
    • Export Citation
  • Banumathy, S.R., Manimaran, A., Sheeba, N., Manivannan, B., Ramya, D., Kumar, Ramasubramanian, G.V. 2010. Genetic diversity analysis of rice germplasm lines for yield attributing traits. Electronic J. Pl. Breed. 4: 500504.

    • Search Google Scholar
    • Export Citation
  • Bhatt, G.M. 1970. Multivariate analysis approach to selection of parents of hybridization aiming at yield improvement in self-pollinated crops. Aust. J. Agric. Res. 21: 17.

    • Search Google Scholar
    • Export Citation
  • Chakravorty, A., Ghosh, P.D., Sahu, P.K. 2013. Multivariate analysis of phenotypic diversity of landraces of rice of west bengal. American J. Exp. Agric. 1: 110123.

    • Search Google Scholar
    • Export Citation
  • Das, B., Sengupta, S., Parida, S.K., Roy, B., Ghosh, M., Prasad, M. 2013. Genetic diversity and population-structure of rice landraces from eastern and north eastern states of India. BMC Genetics 14: 71.

    • Search Google Scholar
    • Export Citation
  • Hall, B.G. 2013. Building phylogenetic trees from molecular data with MEGA. Mol. Biol. Evol. 30: 12291235.

  • HIES 2010. Bangladesh Bureau of Statistics: Household Income and Expenditure Survey, Dhaka, BD, Ministry of Planning, Government of the People's Republic of Bangladesh.

    • Search Google Scholar
    • Export Citation
  • Islam, M.Z., Khalequzzaman, M., Prince, M.F.R.K., Siddique, M.A., Rashid, E.S.M.H., Ahmed, M.S.U., Pittendrigh, B.R., Ali, M.P., Islam et al. 2018a. Diversity and population structure of red rice germplasm in Bangladesh. PLoS ONE. 5: e0196096.

    • Search Google Scholar
    • Export Citation
  • Islam, M.Z., Khalequzzaman, M., Bashar, M.K., Ivy, N.A., Mian, M.A.K., Pittendrigh, B.R., Haque, M.M. and Ali, M. P. 2018b. Variability Assessment of aromatic rice germplasm by pheno-genomic traits and population structure analysis. Scientific Reports 8: 9911.

    • Search Google Scholar
    • Export Citation
  • Islam, M.Z., Siddique, M.A., Rashid, E.S.M.H., Ahmed, M.S.U., Khalequzzaman, M. 2014. Genetic diversity in sadajira rice (Oryza sativa L.) germplasm. The Agriculturists. 1: 2632.

    • Search Google Scholar
    • Export Citation
  • Islam, M.Z., Akhi, A.H., Ivy, N.A., Mian, M.A.K. 2017. Genetic diversity in some aromatic and non-aromatic maintainer lines based on principal component analyses for hybrid rice (Oryza sativa L.) breeding. The Experiment. 1: 25292537.

    • Search Google Scholar
    • Export Citation
  • Kulsum, M.U., Hasan, J., Begum, H., Billah M., Rahman, H. 2011. Genetic diversity of some restorer lines for hybrid rice development. Bangladesh J. Agril. Res. 1: 2128.

    • Search Google Scholar
    • Export Citation
  • Kumar, P., Sharma, V.K., Prasad, B.D. 2015. Characterization of maintainer and restorer lines for wild abortive cytoplasmic male sterility in indica rice (Oryza sativa L.) using pollen fertility and microsatellite (SSR) markers. AJCS. 5: 384393.

    • Search Google Scholar
    • Export Citation
  • Liu, K., Muse, S.V. 2005. Powermarker: An integrated analysis environment for genetic marker analysis. Bioinformatics 21: 21282129.

  • Rosamma, C.A., Vijayakumar, N.K. 2005. Maintainers and restores for CMS lines of rice. J. Trop. Agric. 2: 7577.

  • Salgotra, R.K., Gupta, B.B., Bhat, J.A., Sharma, S. 2015. Genetic diversity and population structure of basmati rice (Oryza sativa L.) germplasm collected from north western himalayas using trait linked SSR markers. Plos One 10(7): e0131858.

    • Search Google Scholar
    • Export Citation
  • Shah, S.M., Naveed, S.A., Arif, M. 2013. Genetic diversity in basmati and non-basmati rice varieties based on microsatellite markers. Pak. J. Bot. 45: 423431.

    • Search Google Scholar
    • Export Citation
  • Sharma, S.K., Singh, S.K., Nandan, R., Kumar, M. 2012. Identification of restorers and maintainers for CMS lines of rice (Oryza sativa L.). Indian J. Plant Genet. Resour. 2: 186188.

    • Search Google Scholar
    • Export Citation
  • Siddique M.A. , Khalequzzaman, M., Islam, M.Z., Ahmed, M.S., Rashid, E.S.M.H. 2013. Genetic diversity in local Boro rice (Oryza sativa L.) genotypes of Bangladesh. Bangladesh J. Pl. Breed. Genet., 26(1): 1924.

    • Search Google Scholar
    • Export Citation
  • Siddique, M.A., Khalequzzaman, M., Islam, M.M., Fatema, K., Latif, M.A. 2016a. Molecular characterization and genetic diversity in geographical indication (GI) rice (Oryza sativa L.) cultivars of Bangladesh. Brazilian J. Bot. 39(2): 631640.

    • Search Google Scholar
    • Export Citation
  • Siddique, M.A., Khalequzzaman, M., Fatema, K., Islam, M.Z., Islam, M.M., Chowdhury, M.A.Z. 2016b. Molecular characterization and genetic diversity of Aman rice (Oryza sativa L.) landraces in Bangladesh. Bangladesh Rice J. 20(2): 111.

    • Search Google Scholar
    • Export Citation
  • Singh, N., Choudhury, D.R., Singh, A.K., Kumar, S., Srinivasan, K., Tyagi, R.K. 2013. Comparison of SSR and SNP markers in estimation of genetic diversity and population structure of Indian rice varieties. Plos One 8(12):e84136

    • Search Google Scholar
    • Export Citation
  • Talukdar, P.R., Rathi, S., Pathak, K., Chetia, S.K., Sarma, R.N. 2017. Population structure and marker-trait association in indigenous aromatic rice. Rice Sci. 3: 145154.

    • Search Google Scholar
    • Export Citation
  • Tamura, K., Peterson, D., Peterson, N., Steche, G., Nei, M., Kumar, S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 27312739.

    • Search Google Scholar
    • Export Citation
  • Thomson, M.J., Septiningsih, E.M., Suwardjo, F., Santoso, T., Silitonga, T.S., McCouch, S.R. 2007. Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers. Theor. Appl. Genet. 114: 559568.

    • Search Google Scholar
    • Export Citation
  • Travis, A.J., Norton, G.J., Datta, S., Sarma, R., Dasgupta, T., Savio, F.L. 2015. Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal. Rice. 8: 35.

    • Search Google Scholar
    • Export Citation
  • Virmani, S.S., Jachuck, P.J., Chatterjee, S.D., Ahmad, M.I. 1998. Opportunities and challenges of developing hybrid rice technology for rainfed lowland and Boro ecosystem. In: Rainfed Rice for Sustainable Food Security (ed.) S.K. Mohanty. Cuttack, India. pp. 5362.

    • Search Google Scholar
    • Export Citation
  • Zheng, K., Huan, N., Bennet, J., Khus, G.S. 1995. PCR-based marker assisted selection in rice breeding. IRRI, Manila, Philippines. pp. 1618.

    • Search Google Scholar
    • Export Citation

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Cereal Research Communications
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