Microcalorimeters to monitor the heat dissipation of bench-scale animal cell cultures on line and in real time require a continuous circuit between the vessel measuring heat flow rate and the bioreactor. The modifications to the transmission lines and calorimetric heat exchanger were to: (i) reverse the usual upward direction of the cell suspension in the flow vessel to downwards; (ii) install an in situ washing/cleaning facility; (iii) use low diffusivity PEEK material; and (iv) maintain thermal equilibration by water-jacketing the transmission tubing. Chemical calibration showed that there was more than a 20% difference between the physical volume and the effective thermal volume. An appropriate thermodynamic system was defined in order to permit enthalpy balance studies.