Authors:Ralf Ignatius, Robert Neuber, Heike Kietzmann, Christiane Berg, Thilo Wenzel, Jörg Fuhrmann, and Michael Müller
This study aimed at evaluating in outpatients an algorithm for the laboratory diagnosis of Clostridioides (Clostridium) difficile infection (CDI), i.e., enzyme immunoassays (EIAs) detecting bacterial glutamate dehydrogenase (GDH) and toxin A/B, followed by polymerase chain reaction (PCR) analyses of samples with discordant EIA results.
In total, 9802 examinations of stool samples by GDH and toxin EIAs performed in 7263 outpatients and 488 inpatients were analyzed retrospectively. Samples with discordant EIA results had been tested by a commercially available PCR assay detecting genes of the C. difficile-specific triose phosphate isomerase (tpi) and toxin B (tcdB).
Concordant EIA results (686 C. difficile-positive, 8121 negative) were observed for 8807 (89.8%; 95% CI, 89.2–90.4%) samples. Of 958 samples with discordant EIA results, 895 were analyzed using PCR and 580 of 854 GDH-positive/borderline, toxin-negative samples (67.9%; 95% CI, 64.7–71.0%) were positive for tpi and tcdB, while 274 samples (32.1%; 95% CI, 29.0–35.3%) were tcdB-negative. In contrast, 35 of 41 GDH-negative, toxin-positive/borderline samples (85.4%; 95% CI, 71.2–93.5%) were tcdB-negative. Still, 6 samples (14.6%; 95% CI, 6.5–28.8%) yielded positive PCR results for both genes.
In conclusion, around 90% of the samples were analyzed appropriately by only applying EIAs. Approximately one third of the PCR-analyzed samples were tcdB-negative; thus, patients most likely did not require CDI treatment.
Authors:Katrin Bote, Judith Pöppe, Susanne Riede, Gerhard Breves, and Uwe Roesler
Glyphosate (N-(phosphonomethyl)glycine) is the most-used herbicide worldwide. Many studies in the past have shown that residues of the herbicide can be found in many cultivated plants, including those used as livestock feed. Sensitivity to glyphosate varies with bacteria, particularly those residing in the intestine, where microbiota is exposed to glyphosate residues. Therefore, less susceptible pathogenic isolates could have a distinct advantage compared to more sensitive commensal isolates, probably leading to dysbiosis.
To determine whether the ruminal growth and survival of pathogenic Escherichia coli or Salmonella serovar Typhimurium are higher when glyphosate residues are present in the feed, an in vitro fermentation trial with a “Rumen Simulation System” (RUSITEC) and a glyphosate-containing commercial formulation was performed.
Colony forming units of E. coli and Salmonella ser. Typhimurium decreased steadily in all fermenters, regardless of the herbicide application. Minimum inhibitory concentrations of the studied Salmonella and E. coli strains did not change, and antibiotic susceptibility varied only slightly but independent of the glyphosate application.
Overall, application of the glyphosate-containing formulation in a worst-case concentration of 10 mg/L neither increased the abundance for the tested E. coli and Salmonella strain in the in vitro fermentation system, nor promoted resistance to glyphosate or antibiotics.
Authors:Soraya Mousavi, Stefan Bereswill, and Markus M. Heimesaat
Humans have lost their vitamin C-synthesizing capacities during evolution. Therefore, the uptake of this essential compound from external sources is mandatory in order to prevent vitamin C-deficient conditions resulting in severe morbidities such as scurvy. The potent antioxidant, immunomodulatory, and antiinfectious effects of vitamin C are known since the 1930s. We here (i) review the impact of vitamin C on innate and adaptive immune functions, (ii) provide an overview of its antimicrobial, antibacterial, antiviral, antiparasitic, and antifungal properties, and finally, (iii) discuss vitamin C as an adjunct treatment option for the combat of human infections by bacteria, particularly by emerging multidrug-resistant species.
Authors:Cosme Alvarado-Esquivel, Ángel Osvaldo Alvarado-Félix, and Gustavo Alexis Alvarado-Félix
The epidemiology of Toxocara infection in rural Mexico is largely unknown. Therefore, we sought to determine the seroprevalence of Toxocara infection in rural people in a northern Mexican state. We performed a cross-sectional seroprevalence study of 641 people living in rural Durango State including 282 subjects of the general population, 214 subjects of Huichol ethnicity, and 145 subjects of Mennonite ethnicity. Sera of participants were analyzed for the presence of anti-Toxocara immunoglobulin G (IgG) antibodies using a commercially available enzyme immunoassay. Three (0.5%) of the 641 subjects tested were positive for anti-Toxocara IgG antibodies. Of the 3 Toxocara seropositive subjects, two were females, aged 19 and 39 years, and one was male, aged 59 years. They had contacted with dogs, cleaned cat excrement, consumed unwashed raw fruits, contacted soil, or lived in a house with soil floors. Seroprevalence of Toxocara infection was similar among the 3 groups of population studied: 0.4% for the general population, 0.9% for Huicholes, and 0.0% for Mennonites (P = 0.41). In conclusion, the Toxocara seroprevalence found in subjects in rural Durango is low as compared with those reported in people from rural areas in other countries.
Zoopsidella grahamii sp. nov., related to the Australasian Z. caledonica, is described from the Andes of Central Peru (Oxapampa Province) and southern Ecuador. It is distinguished from Z. caledonica by the smaller plant size, much lower number of lobe cells and different leaf shape, and by the much more elongate perianth mouth lobes consisting of a row of 6-7 narrowly rectangular cells. Riccardia gradsteinii sp. nov., from the same general area in Peru as Z. grahamii, is unique among all dendroid species of the genus by the broad, frilled wings of the main axis, being split into complicatedly bent and strongly crispate scales.
Authors:T. Pócs, N.-K.-T. Tram, Q. He, T. Katagiri, and T.-T. Luong
After the examination of the Cryptogam collection in the Herbarium of the University of Science, Vietnam National University Ho Chi Minh City (PHH), 25 species proved to be new to Vietnam, including one hornwort and 24 liverworts. Among them, four genera: Denotarisia Grolle, Gongylanthus Nees, Leiomitra Lindb. and Lepicolea Dumort. are new records for the country. Diagnostic characters and illustrations are given for some taxa, as well as locality notes and habitat descriptions are provided for each collecting area.
Authors:Isabel Stephany-Brassesco, Stefan Bereswill, Markus M. Heimesaat, and Matthias F. Melzig
Antibiotic resistance of Streptococcus pneumoniae has risen to worrying levels in the past few decades worldwide, and subsequently, effective treatment of respiratory tract infections has become even more challenging. While the need to develop new strategies to combat bacterial infections is urgent, novel antibiotic compounds are no longer a priority of the pharmaceutical industry. However, resistance-modifying agents can alleviate the spread of antibiotic resistance and render existing antibiotics effective again. In the present study, we aimed to determine the combinatory antimicrobial effects of the commercial herbal product Cefabronchin® and antibiotic compounds, such as amoxicillin and clarithromycin, on 6 clinical isolates of S. pneumoniae. Therefore, the minimal inhibitory concentration (MIC) of each agent before and after adding Cefabronchin® at different concentrations was determined by applying the checkerboard method. Sub-inhibitory concentrations of the added Cefabronchin® were found to reduce the MIC down to between 3.4% and 29.2% of the amoxicillin MIC and down to between 10.4% and 45.8% of the clarithromycin MIC in all 6 strains. In conclusion, this study provides evidence for the improved antimicrobial effects of commonly used antibiotics in combination with Cefabronchin® in order to combat infections with antibiotic-resistant S. pneumoniae strains.
Authors:P. Golinia, A. Nasrolahi, and F. R. Barboza
Biofouling is predicted to increase in the course of global warming, making the study and monitoring of its ecological and economic consequences of great importance. The present study describes, for the first time, recruitment and successional patterns of fouling communities in the Caspian Sea. During one year, short-term panels (STP; replaced every 2 months) and long-term panels (LTP; retrieved after 4, 8 and 12 months) were deployed in the Western Iranian coast of the Caspian Sea. Temporal trends in both sets of panels were evaluated through Generalized Additive Models and discussed in light of the environmental variables registered in each sampling event. Recruitment and successional patterns observed at the community level were mainly driven by barnacles and bryozoans, the dominant taxa over the entire sampling period. Panel coverage, biomass and inorganic to organic matter ratio exhibited clear seasonal patterns in STP, following temperature and chlorophyll a trends. In LTP, coverage and biomass increased over the study period, while the inorganic to organic matter ratio peaked in summer and decreased during autumn and winter months. These results represent a baseline for future studies on biofouling communities in the Caspian Sea, where this topic has been completely neglected.
Authors:R. Olmo Gilabert, A. F. Navia, G. De La Cruz-Agüero, J. C. Molinero, U. Sommer, and M. Scotti
Anthropic activities impact ecosystems worldwide thus contributing to the rapid erosion of biodiversity. The failure of traditional strategies targeting single species highlighted ecosystems as the most suitable scale to plan biodiversity management. Network analysis represents an ideal tool to model interactions in ecosystems and centrality indices have been extensively applied to quantify the structural and functional importance of species in food webs. However, many network studies fail in deciphering the ecological mechanisms that lead some species to occupy the most central positions in food webs. To address this question, we built a high-resolution food web of the Gulf of California and quantified species position using 15 centrality indices and the trophic level. We then modelled the values of each index as a function of traits and other attributes (e.g., habitat). We found that body size and mobility are the best predictors of indices that characterize species importance at local, meso- and global scale, especially in presence of data accounting for energy direction. This result extends previous findings that illustrated how a restricted set of traitaxes can predict whether two species interact in food webs. In particular, we show that traits can also help understanding the way species are affected by and mediate indirect effects. The traits allow focusing on the processes that shape the food web, rather than providing case-specific indications as the taxonomy-based approach. We suggest that future network studies should consider the traits to explicitly identify the causal relationships that link anthropic impacts to role changes of species in food webs.
Authors:Ralf Ignatius, Christiane Berg, Chris Weiland, Angela Darmer, Thilo Wenzel, Marion Lorenz, Jörg Fuhrmann, and Michael Müller
Stool antigen tests are recommended for the diagnosis of Helicobacter pylori infection. Here, we compared two novel assays, i.e., one enzyme immunoassay (EIA) and one immunochromatography assay (ICA), with a chemiluminescence immunoassay (CLIA) that had previously been compared with rapid urease test, histology, and urea breath test. Two hundred sixty-six frozen stool samples with defined CLIA results (42 positives, 219 negatives, and 5 samples with borderline results) collected between January and May 2018 were thawed and immediately tested by EIA, ICA, and CLIA.
In 248 samples with repeatedly positive/negative CLIA results, EIA and ICA were positive for 40 and 37 of 41 CLIA-positive samples and yielded negative results for 206 and 201 of 207 CLIA-negative samples, respectively. There was a high positive percent agreement (EIA, 97.6%; 95% confidence interval (95% CI), 86.3–100%; ICA, 90.2%; 95% CI, 76.9–96.7%), as well as a negative percent agreement between the assays (EIA, 99.5%; 95% CI, 97.0–100%; ICA, 97.1%; 95% CI, 93.7–98.8%). This was further supported by kappa values indicating very good agreement (CLIA vs. EIA, 0.971; CLIA vs. ICA, 0.857). In conclusion, both EIA and ICA comprise valuable assays for the detection of H. pylori antigen in stool samples.