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Beta diversity, species replacement and nestedness are often examined through pairwise comparisons of sites based on presence-absence data, and the relative importance of these ecological phenomena is evaluated by operations with dissimilarity coefficients. An example is the nestedness resultant dissimilarity (NRD) procedure recently proposed by Baselga (2010, Global Ecology andBiogeography 19: 134–143) to disentangle the nestedness fraction of beta diversity from species replacement. In our view, the component terms in this measure are not scaled uniformly and the nestedness fraction cannot be quantified properly without giving clear definitions for its measurement. We suggest to distinguish among three additive fractions of the species set of two sites: number of species shared (overlap), species replacement (=spatial turnover) and richness difference. Then, absolute beta diversity is obtained as a composite of the second two fractions (known as βWB), while nestedness is derived from the first and the third. To express beta diversity and nestedness in a relativized form, the respective sums are divided by the total number of species. These allow defining a new index to measure the fraction of beta diversity which is shared by nestedness as well, and is calculated as relativized richness difference with the condition that the two sites being compared have at least one species in common. It is called diversity-nestedness intersection coefficient (F). Baselga’s nestedness resultant dissimilarity and the diversity-nestedness intersection coefficient are compared graphically using artificial and actual examples. These functions follow a mathematical relationship for perfectly nested data, otherwise their results are divergent. Discrepancy increases when beta diversity is large, especially if richness differences override species replacement effects in shaping presence-absence data structures. An advantage of F is its compatibility with a general theoretical and methodological framework for revealing pattern in presence-absence data matrices.
How are bryophyte alpha and beta diversities distributed across spatial scales along an elevational gradient in an oceanic island? Which mechanisms and drivers operate to shape them? Starting from a multiscale hierarchical sampling approach along an 1000 m elevational transect, we used additive diversity partitioning and null modeling to evaluate the contributions of the alpha and beta diversity components to overall bryophyte diversity in Terceira Island, Azores. Substrate-level diversity patterns were explored by means of the Sørensen Similarity Index and the Lloyd Index of Patchiness. Elevation-level beta diversity was decomposed into its replacement and richness differences components, with several environmental variables being evaluated as diversity predictors. Bryophyte diversity proved to be primarily due to beta diversity between elevation sites, followed by diversity among substrates. Compositional differences between neighboring sites decreased with elevation, being mainly caused by species replacement and correlating with differences in relative humidity and disturbance. At the substrate level, we found a great homogeneity in terms of species composition, coupled with a low substrate specialization rate. We conclude that, in Terceira’s native vegetation patches, regional processes, such as environmental gradients associated with elevation, play a greater role in shaping bryophyte diversity than local processes. Moister and less disturbed areas at mid-high elevation harbor a richer bryoflora, consistently more similar and stable between neighbouring sites. Simultaneously, the different substrates available are somewhat ecologically redundant, supporting few specialized species, pointing to these areas providing optimal habitat conditions for bryophytes. Our findings provide a better understanding of how bryophyte diversity is generated in Terceira Island, indicating that management and conservation measures should focus on island-level approaches, aiming to protect and rehabilitate additional natural vegetation patches at different elevations, especially in the severely disturbed lowlands.
geographic units . Plant Biosystems 150 ( 6 ): 1395 – 1407 . Legendre , P. 2014 . Interpreting the replacement and richness difference components of beta
