The rate of genetic gain in the quantity and quality of soybean grain depends considerably on the genetic diversity of the selected parental components. Genetic diversity assessment is a crucial aspect of breeding that maximizes genetic improvement. The objectives of this study were to evaluate the genetic diversity of the selected soybean germplasm using genetic markers, as well as to compare the effectiveness of breeding procedures with and without the use of genetic markers in parental selection. The genetic relationships within the selected soybean germplasm were estimated using 14 simple sequence repeats (SSRs). The agronomic performance (grain yield, protein and oil content in the grain) of the parental components and derived lines was determined in field trials. Based on SSR marker data and phenotypic data, an association was found between the agronomic performance of the derived lines and the genetic distance between the parental lines. Crosses between more diverse parents resulted in derived lines with greater values for grain yield and grain quality compared with the parents than crosses between similar parents. The results indicated the usefulness of genetic marker information in parental selection, contributing to breeding efficiency.
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